A curated catalogue of human genomic structural variation




Variant Details

Variant: essv16464269



Internal ID18981143
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr17:40824390..40824484hg38UCSC Ensembl
chr17:38980642..38980736hg19UCSC Ensembl
Cytoband17q21.2
Allele length
AssemblyAllele length
hg3895
hg1995
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv3688781
Supporting Variants
Samples
Known GenesTMEM99
MethodSequencing
Analysisde novo assemblies produced from SoapDenovo2 were aligned to GRC37 using LAST and input into SoapAsmVar for population-wide structural variation detection. The method is described in the publication
PlatformIllumina HiSeq 2000
Comments
ReferenceBesenbacher_et_al_2015
Pubmed ID25597990
Accession Number(s)essv16464269
Frequency
Sample Size20
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer