A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv953n27



Internal ID22767682
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr9:135571320..135584977hg38UCSC Ensembl
chr9:138463166..138476823hg19UCSC Ensembl
chr9:137602987..137616644hg18UCSC Ensembl
chr9:135689111..135702768hg17UCSC Ensembl
Cytoband9q34.3
Allele length
AssemblyAllele length
hg3813658
hg1913658
hg1813658
hg1713658
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnsv466658, nsv466657
SamplesHGDP01179, HGDP00666
Known GenesLOC100130954
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)dgv953n27
Frequency
Sample Size1557
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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