A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv943n27



Internal ID20133201
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr9:113052193..113104996hg38UCSC Ensembl
chr9:115814473..115867276hg19UCSC Ensembl
chr9:114854294..114907097hg18UCSC Ensembl
chr9:112894028..112946830hg17UCSC Ensembl
Cytoband9q32
Allele length
AssemblyAllele length
hg3852804
hg1952804
hg1852804
hg1752803
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnsv466493, nsv466492
SamplesHGDP00199, HGDP00692
Known GenesFAM225B, ZFP37
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)dgv943n27
Frequency
Sample Size1557
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer