A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv936n27



Internal ID22767665
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr9:29986252..30053822hg38UCSC Ensembl
chr9:29986250..30053820hg19UCSC Ensembl
chr9:29976250..30043820hg18UCSC Ensembl
chr9:29976250..30043820hg17UCSC Ensembl
Cytoband9p21.1
Allele length
AssemblyAllele length
hg3867571
hg1967571
hg1867571
hg1767571
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnsv466366, nsv466365
Samples1780862574_A, HGDP00146
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)dgv936n27
Frequency
Sample Size1557
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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