A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv927e212



Internal ID22783854
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr17:45492771..45582619hg38UCSC Ensembl
chr17:43570137..43659985hg19UCSC Ensembl
Cytoband17q21.31
Allele length
AssemblyAllele length
hg3889849
hg1989849
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3582691, esv3582679, esv3582686, esv3582690, esv3582681, esv3582689, esv3582687, esv3582683, esv3582692, esv3582680
Samples401706BJ, 400359OR, 400308SP, 400468OB, 401299ST, 400141CC, 400625FT, 400077EB, 401949MN, 401093VL, 400453LN, 401582GG, 401064FR, 401808PS, 400134WK, 400148MS, 400073HT, 401027KW, 400783MJ, 401853WR, 401526WB, 401859GS, 401504RJ, 400681MC, 401017SC, 402001SR, 400249BC, 400135DR, 401334DH, 401898DS, 400376SJ, 400677HD, 401265CB, 400177SJ, 401105WS, 400266BA, 401836SI, 401882CR, 401576WC, 400243CK, 401993HM, 400138LA, 400494ML
Known GenesLRRC37A4P
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv927e212
Frequency
Sample Size873
Observed Gain0
Observed Loss43
Observed Complex0
Frequencyn/a


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