A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv8n68



Internal ID19006529
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr10:46553157..46740937hg38UCSC Ensembl
chr10:46808680..46996460hg19UCSC Ensembl
chr10:46228686..46416466hg18UCSC Ensembl
chr10:46228686..46416466hg17UCSC Ensembl
Cytoband10q11.22
Allele length
AssemblyAllele length
hg38187781
hg19187781
hg18187781
hg17187781
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnsv831852, nsv831851
Samples
Known GenesFAM35BP, GPRIN2, SYT15
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)dgv8n68
Frequency
Sample Size95
Observed Gain17
Observed Loss0
Observed Complex0
Frequencyn/a


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