A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv88e212



Internal ID22783015
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:145211005..145228017hg38UCSC Ensembl
chr1:144335889..144352893hg19UCSC Ensembl
Cytoband1q21.1
Allele length
AssemblyAllele length
hg3817013
hg1917005
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3568786, esv3569564
Samples401640WJ, 400574MA, 400225CJ, 401258PC, 401064FR, 401808PS, 400749VW, 400843FL, 401185LE, 401372RR, 400785AK, 401480PG
Known GenesLINC00623, LOC100288142, LOC728875
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv88e212
Frequency
Sample Size873
Observed Gain12
Observed Loss0
Observed Complex0
Frequencyn/a


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