A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv885e212



Internal ID22783812
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr17:7253579..7269312hg38UCSC Ensembl
chr17:7156898..7172631hg19UCSC Ensembl
Cytoband17p13.1
Allele length
AssemblyAllele length
hg3815734
hg1915734
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3582508, esv3582509
Samples402038MR, 400712GC
Known GenesCLDN7, ELP5
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv885e212
Frequency
Sample Size873
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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