Internal ID | 20133139 |
Landmark | |
Location Information | |
Cytoband | 8p21.3 |
Allele length | Assembly | Allele length | hg38 | 68810 | hg19 | 68812 | hg18 | 68811 | hg17 | 68811 |
|
Variant Type | CNV loss |
Copy Number | |
Allele State | |
Allele Origin | |
Probe Count | |
Validation Flag | |
Merged Status | M |
Merged Variants | |
Supporting Variants | nsv465614, nsv465618, nsv465615 |
Samples | HGDP00784, HGDP00776, HGDP00961 |
Known Genes | FAM160B2, HR, LGI3, NUDT18, REEP4, SFTPC |
Method | SNP array |
Analysis | An HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives. |
Platform | Not reported |
Comments | |
Reference | Itsara_et_al_2009 |
Pubmed ID | 19166990 |
Accession Number(s) | dgv881n27
|
Frequency | Sample Size | 1557 | Observed Gain | 0 | Observed Loss | 3 | Observed Complex | 0 | Frequency | n/a |
|