A curated catalogue of human genomic structural variation

Variant Details

Variant: dgv85n27

Internal ID20132343
Location Information
TypeCoordinatesAssemblyOther Links
chr10:46172086..46332377hg38UCSC Ensembl
chr10:47543322..47703613hg19UCSC Ensembl
chr10:47013328..47173619hg18UCSC Ensembl
chr10:47013328..47173619hg17UCSC Ensembl
Allele length
AssemblyAllele length
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnsv467042, nsv466945, nsv466946, nsv466999, nsv467044, nsv466995, nsv467010, nsv467050, nsv467030, nsv467057, nsv466996, nsv466982, nsv467018, nsv467046, nsv466955, nsv466993, nsv466954, nsv466970, nsv466953, nsv467025, nsv467004, nsv466939, nsv467048, nsv466989, nsv466944, nsv466990, nsv466956, nsv466998, nsv466979, nsv467012, nsv467041, nsv467003, nsv467034, nsv467029, nsv466959, nsv467031, nsv467020, nsv466974, nsv467023, nsv466987, nsv466966, nsv467000, nsv467024, nsv466980, nsv467006, nsv467035, nsv467017, nsv466988, nsv466952, nsv466951, nsv467013, nsv466985, nsv466960, nsv466978, nsv467001, nsv466992, nsv466984, nsv466941, nsv467043, nsv467037, nsv466964, nsv466958, nsv467040, nsv466986, nsv466976, nsv467021, nsv467008, nsv467047, nsv467015, nsv467019, nsv466943, nsv467033, nsv466971, nsv467055, nsv467009, nsv466940, nsv466957, nsv466977, nsv466948, nsv466962, nsv466965, nsv467056, nsv467051, nsv466973, nsv466947, nsv467028, nsv467014, nsv466975, nsv466991, nsv466967, nsv467052, nsv467053, nsv466963, nsv466968, nsv467002, nsv466969, nsv466942, nsv466981, nsv467026, nsv467032, nsv467054, nsv466997, nsv467045, nsv467011
Samples1782681076_A, HGDP00157, HGDP00607, HGDP00640, 1782681093_A, HGDP01379, 1780862307_A, HGDP00739, HGDP00127, HGDP00025, HGDP00884, NINDS_243, HGDP00577, HGDP00646, HGDP00654, HGDP00154, HGDP00626, HGDP00888, HGDP01156, HGDP00136, 1780862304_A, HGDP00423, 1780862433_A, 1780862410_A, 1780854039_A, HGDP00677, HGDP00428, 1782681086_A, HGDP00945, HGDP00021, HGDP00886, HGDP00600, 1780854537_A, 1780854464_A, 1780854517_A, HGDP00251, 1782681313_A, HGDP00476, 1787431198_A, HGDP00462, 1780862599_A, 1798860592_A, HGDP00612, 1780862480_A, HGDP00787, 1780862160_A, HGDP00785, HGDP00883, HGDP00526, 1798860565_A, HGDP01332, HGDP00895, HGDP00684, 1780854216_A, HGDP00039, HGDP00108, 1780862252_A, HGDP01296, 1780862360_A, HGDP00254, HGDP01253, HGDP00037, 1780862274_A, HGDP00208, HGDP00226, HGDP01352, HGDP00650, 1780854538_A, HGDP00338, HGDP01359, 1782681296_A, HGDP00644, 1798860084_A, 1780854463_A, HGDP00693, 1780854382_A, HGDP00649, HGDP00731, 1798860191_A, HGDP00143, 1780854393_A, 1798860114_A, HGDP01155, HGDP01248, 1780854441_A, HGDP00901, HGDP00896, HGDP00134, HGDP00445, HGDP00364, HGDP00882, HGDP00625, 1798860569_A, HGDP00189, HGDP01177, 1798860570_A, HGDP00140, HGDP00007, 1780854296_A, 1780862416_A, 1782681117_A, 1787431196_A, 1780854477_A, HGDP00790
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Pubmed ID19166990
Accession Number(s)dgv85n27
Sample Size1557
Observed Gain104
Observed Loss0
Observed Complex0

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