A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv854e212



Internal ID22783781
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr16:74358109..74432521hg38UCSC Ensembl
chr16:74392007..74466419hg19UCSC Ensembl
Cytoband16q23.1
Allele length
AssemblyAllele length
hg3874413
hg1974413
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3582303, esv3582306, esv3582317, esv3582304, esv3582308
Samples400920MK, 400618GC, 400114GR, 400553PP, 401551MB, 400061DE, 400526DR, 400356MC, 401596PJ, 400582WS, 400442FE, 401764JJ, 401873BK, 400974PS, 401691HA, 401879HJ, 400686BM, 401619BT, 401075MN, 400362TV, 401874DJ, 401786WD, 402073LQ, 401607LL, 402042BJ, 400540BM, 400532MH
Known GenesCLEC18B, LOC283922
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv854e212
Frequency
Sample Size873
Observed Gain0
Observed Loss27
Observed Complex0
Frequencyn/a


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