A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv838e212



Internal ID22783765
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr16:55770359..55782780hg38UCSC Ensembl
chr16:55804271..55816692hg19UCSC Ensembl
Cytoband16q12.2
Allele length
AssemblyAllele length
hg3812422
hg1912422
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3582241, esv3582224, esv3582240, esv3582221, esv3582217
Samples401474CE, 400984LD, 400379BB, 401687LR, 401780BB, 400368SD, 400356MC, 401475MK, 401580CA, 400079AP
Known GenesCES1P1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv838e212
Frequency
Sample Size873
Observed Gain0
Observed Loss10
Observed Complex0
Frequencyn/a


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