Variant DetailsVariant: dgv808e212 Internal ID | 20149264 | Landmark | | Location Information | | Cytoband | 16p12.2 | Allele length | Assembly | Allele length | hg38 | 8730 | hg19 | 8730 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | esv3582105, esv3582107, esv3582106, esv3582102, esv3582108, esv3582103 | Samples | 401852SK, 400105BB, 401460LW, 400995MS, 400141CC, 401368WR, 401402EN, 400658BW, 400379BB, 401936BA, 400150SS | Known Genes | PRKCB | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | dgv808e212
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 11 | Observed Complex | 0 | Frequency | n/a |
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