A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv802e212



Internal ID20149258
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr16:17380344..17387916hg38UCSC Ensembl
chr16:17474201..17481773hg19UCSC Ensembl
Cytoband16p12.3
Allele length
AssemblyAllele length
hg387573
hg197573
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3582067, esv3582066
Samples402064DC, 400574MA
Known GenesXYLT1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv802e212
Frequency
Sample Size873
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer