A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv783e212



Internal ID19007991
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr16:6605800..6642150hg38UCSC Ensembl
chr16:6655801..6692151hg19UCSC Ensembl
Cytoband16p13.3
Allele length
AssemblyAllele length
hg3836351
hg1936351
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3570209, esv3570198
Samples401500OM, 401875FG
Known GenesRBFOX1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv783e212
Frequency
Sample Size873
Observed Gain2
Observed Loss0
Observed Complex0
Frequencyn/a


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