Variant DetailsVariant: dgv779e212![](http://dgv.tcag.ca/gb2/gbrowse_img/dgv2_hg38/?name=chr16:2037225..2038968;width=800;overview=1) Internal ID | 20149235 | Landmark | | Location Information | | Cytoband | 16p13.3 | Allele length | Assembly | Allele length | hg38 | 1744 | hg19 | 1744 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | esv3581935, esv3581934, esv3581936 | Samples | 400439IM, 401819BS, 400917CG, 400429YF, 401841OB, 400148MS, 401914PR, 400712GC, 401628GC | Known Genes | SLC9A3R2 | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | dgv779e212
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 9 | Observed Complex | 0 | Frequency | n/a |
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