A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv777e201



Internal ID22760135
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:98128031..98212394hg38UCSC Ensembl
chr3:97846875..97931238hg19UCSC Ensembl
Cytoband3q11.2
Allele length
AssemblyAllele length
hg3884364
hg1984364
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv2725670, esv2725672
SamplesSSM059, SSM036, SSM008, SSM083, SSM071, SSM027, SSM075, SSM045, SSM046, SSM011, SSM079, SSM065, SSM087, SSM038, SSM097, SSM039, SSM009, SSM073, SSM093, SSM050, SSM074, SSM042, SSM002, SSM041, SSM023, SSM058, SSM092, SSM021, SSM018, SSM069, SSM061, SSM029, SSM096, SSM062, SSM026, SSM017, SSM019, SSM035, SSM094, SSM032, SSM031, SSM067, SSM001, SSM033, SSM066, SSM006, SSM085, SSM068, SSM072, SSM082, SSM020, SSM007, SSM078, SSM016, SSM053, SSM080, SSM077, SSM076, SSM022, SSM010, SSM091, SSM055, SSM070, SSM095, SSM025, SSM004, SSM043, SSM052, SSM049
Known GenesOR5H1, OR5H14, OR5H15
MethodSequencing
AnalysisBreakdancer:4 times standard deviation,VariationHunter:4 times standard deviation and at least 3 supportting reads
PlatformIllumina HiSeq 2000
Comments
ReferenceWong_et_al_2012b
Pubmed ID23290073
Accession Number(s)dgv777e201
Frequency
Sample Size96
Observed Gain0
Observed Loss69
Observed Complex0
Frequencyn/a


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