Variant DetailsVariant: dgv767e212 | Internal ID | 20149223 | | Landmark | | | Location Information | | | Cytoband | 15q26.3 | | Allele length | | Assembly | Allele length | | hg38 | 6566 | | hg19 | 6566 |
| | Variant Type | CNV loss | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | | | Supporting Variants | esv3581887, esv3581881, esv3581883, esv3581885, esv3581884 | | Samples | 401102RD, 401021SC, 401191MI, 400920MK, 400599CP, 401212HJ, 401489CB, 400789KV, 401261HD, 400468OB, 401899MB, 401491BB, 401931JL, 401195PN, 400625FT, 400855BD, 401556KR, 400425SL, 401582GG, 400658BW, 401281BP, 401792KR, 400482MD, 400051MR, 402064DC, 400148MS, 400526DR, 400583HS, 401832MC, 401664SD, 401965TG, 401495NR, 400836LK, 401818PC, 400653GP, 401773AM, 401609MB, 400186WC, 400002HK, 400929MM, 400983PV, 400383HL, 401785MJ, 401725MR, 401691HA, 400240HJ, 400960TN, 401278DM, 401879HJ, 401930GD, 401813DN, 401262RR, 401892MJ, 400888MS, 400211BJ, 400242TP, 400869BK, 400319HT, 400258BC, 400177CG, 400444MM, 400722OM, 401365DJ, 400246MG, 401847RK, 400069CN, 401012TP, 401287CF, 400235MP, 400128MJ, 402048WB, 400328LM, 401100SJ, 400177SJ, 401728WK, 401177SL, 400291VJ, 400300SD, 400209BS, 401510DG, 400091BS | | Known Genes | OR4F6 | | Method | SNP array | | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | | Platform | Affymetrix CytoScan HD 2.7M array | | Comments | | | Reference | Uddin_et_al_2014 | | Pubmed ID | 25503493 | | Accession Number(s) | dgv767e212
| | Frequency | | Sample Size | 873 | | Observed Gain | 0 | | Observed Loss | 81 | | Observed Complex | 0 | | Frequency | n/a |
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