Variant DetailsVariant: dgv747n27 Internal ID | 20133005 | Landmark | | Location Information | | Cytoband | 6p21.33 | Allele length | Assembly | Allele length | hg38 | 104924 | hg19 | 104924 | hg18 | 104924 | hg17 | 104924 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | nsv462863, nsv462822, nsv462826, nsv462845, nsv462846, nsv462834, nsv462865, nsv462831, nsv462828, nsv462832, nsv462860, nsv462829, nsv462861, nsv462823, nsv462821, nsv462859, nsv462849, nsv462820, nsv462824, nsv462847, nsv462852, nsv462819, nsv462833, nsv462825, nsv462850, nsv462858, nsv462848, nsv462864, nsv462835, nsv462842, nsv462836, nsv462830, nsv462853, nsv462866 | Samples | HGDP00120, HGDP01251, HGDP00739, HGDP00753, 1780862094_A, HGDP00832, HGDP00927, HGDP00110, HGDP00945, HGDP01290, HGDP01212, HGDP01208, HGDP00920, HGDP00675, HGDP00868, HGDP00876, HGDP01203, HGDP00852, 1780862101_A, HGDP01023, HGDP00733, HGDP00975, HGDP01237, NINDS_191, HGDP01223, HGDP00699, HGDP00771, HGDP01096, HGDP01250, HGDP00656, HGDP00445, HGDP01240, HGDP00762, HGDP00689 | Known Genes | HCG26, HCP5, MICA | Method | SNP array | Analysis | An HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives. | Platform | Not reported | Comments | | Reference | Itsara_et_al_2009 | Pubmed ID | 19166990 | Accession Number(s) | dgv747n27
| Frequency | Sample Size | 1557 | Observed Gain | 0 | Observed Loss | 34 | Observed Complex | 0 | Frequency | n/a |
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