A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv72n27



Internal ID22766801
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr10:20543483..20576228hg38UCSC Ensembl
chr10:20832412..20865157hg19UCSC Ensembl
chr10:20872418..20905163hg18UCSC Ensembl
chr10:20872418..20905163hg17UCSC Ensembl
Cytoband10p12.31
Allele length
AssemblyAllele length
hg3832746
hg1932746
hg1832746
hg1732746
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnsv466776, nsv466778, nsv466777
SamplesHGDP01187, HGDP01103, HGDP00779
Known GenesMIR4675
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)dgv72n27
Frequency
Sample Size1557
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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