A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv661n27



Internal ID22767390
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr4:89651171..89709750hg38UCSC Ensembl
chr4:90572322..90630901hg19UCSC Ensembl
chr4:90791345..90849924hg18UCSC Ensembl
chr4:90929500..90988079hg17UCSC Ensembl
Cytoband4q22.1
Allele length
AssemblyAllele length
hg3858580
hg1958580
hg1858580
hg1758580
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnsv461578, nsv461579, nsv461580
SamplesHGDP00392, HGDP00351, HGDP00359
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)dgv661n27
Frequency
Sample Size1557
Observed Gain3
Observed Loss0
Observed Complex0
Frequencyn/a


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