Variant DetailsVariant: dgv654e212 Internal ID | 20149110 | Landmark | | Location Information | | Cytoband | 14q24.3 | Allele length | Assembly | Allele length | hg38 | 35274 | hg19 | 35274 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | esv3581293, esv3581299, esv3581289, esv3581300 | Samples | 401117NA, 401845MJ, 400493KH, 400620MT, 401308LD, 400155CW, 400882DD, 400749VW, 401831TW, 401977ES, 400791GC, 400800MW, 400886MP, 400362TV, 400158FB, 400376SJ, 401894PD, 402042BJ | Known Genes | ACOT1, HEATR4 | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | dgv654e212
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 18 | Observed Complex | 0 | Frequency | n/a |
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