A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv584n27



Internal ID22767313
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:21733..143598hg38UCSC Ensembl
chr3:63411..185281hg19UCSC Ensembl
chr3:38411..160281hg18UCSC Ensembl
chr3:38411..160281hg17UCSC Ensembl
Cytoband3p26.3
Allele length
AssemblyAllele length
hg38121866
hg19121871
hg18121871
hg17121871
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnsv460293, nsv460296, nsv460300
SamplesHGDP00183, HGDP00096, HGDP00208
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)dgv584n27
Frequency
Sample Size1557
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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