Variant DetailsVariant: dgv528e212Internal ID | 20148984 | Landmark | | Location Information | | Cytoband | 12q24.32 | Allele length | Assembly | Allele length | hg38 | 19465 | hg19 | 19465 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | esv3580534, esv3580530 | Samples | 400920MK, 400294HD, 401434VN, 400650RM, 401831TW, 401013GJ, 401939GD, 400791GC, 401514BA, 400837HN, 400722OM, 401054VM, 400328LM, 401358VP, 400012CJ, 400238BB | Known Genes | SLC15A4 | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | dgv528e212
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 16 | Observed Complex | 0 | Frequency | n/a |
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