A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv527e212



Internal ID20148983
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:128794319..128806710hg38UCSC Ensembl
chr12:129278864..129291255hg19UCSC Ensembl
Cytoband12q24.32
Allele length
AssemblyAllele length
hg3812392
hg1912392
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3580533, esv3580531, esv3580529, esv3580532
Samples400520FM, 402067KS, 400105BB, 401674DD, 400782IE, 400654YW, 400949AM, 401942MP, 401155ML, 401258PC, 402009WP, 401067BD, 400789KV, 401962BK, 400641WJ, 401105WS, 400240HJ, 401361GG, 400168HC, 401504RJ, 400773GS, 401742KB, 400072GR, 400948EV, 400987FB, 401735LE, 401104DM, 401841OB, 400705KK, 401380OL, 401640WJ, 401721CP, 4000046CJ, 401074CM, 400106PC, 400971MK, 402061PI, 400681MC, 401519SA, 400821FE, 401391PJ, 401354KM, 400277LM, 401943KA, 400271SR, 401428LD, 401869BG, 400213DB, 400211BJ, 401057SS, 400927BD, 400553PP, 402056KD, 400547BS, 400730SH, 400999HR, 401797LS, 401196CR, 400315DA, 400482MD, 402019MC, 401395OP, 400002HK, 400508RD, 401297KC, 400205SP, 400802DP, 400460DM, 400533BB, 400155CW, 400719TM, 400863SS, 400302HW, 402022SM, 400368SD, 400661AD, 401068SD, 401086MD, 401386WA, 401468RL, 401930GD, 402029KJ, 400383HL, 401295HB, 402012RR, 401056TJ, 402038MR, 400453LN, 401203MP, 401314MK, 401690HA, 400422PN, 400141CC, 401696CG, 401423BA, 400829MR, 400063BR, 401259LS, 400619MP, 401475MK, 400077EB, 400506GN, 400732MA, 400014SL, 400040CN, 401250WD, 401554VN, 400207HN, 400686BM, 401494PD, 400994HJ, 400429YF, 401655DC, 400103BN, 401968HL, 401646MC, 401596PJ, 400385LJ, 400134WK, 401592NR, 401040KM, 401628GC, 400051MR, 400248JO, 400655WB, 401265CB, 400634MP, 401687LR, 400361HC, 400528LR, 400586RD, 400325BE, 401252AE, 401717LP, 400871CM, 401066MM, 402048WB, 400236DB, 401365DJ, 401781SL, 400109LJ, 401277RA, 400982BS, 400006DK, 400150SS, 401053MF, 400833BB, 401020DJ, 400044HS, 400177SJ, 400206SC, 401415CB, 400835FD, 401778CB, 401882CR, 400960TN, 400221VM, 401746WW, 401173AI, 400675HC, 400770MA, 401151RJ, 400438DB, 401932GN, 401006ES, 401443JK, 400338SR, 400486LS, 400432VA, 400138LA, 400468OB, 402001SR, 401261HD, 401857VG, 401926MR, 400886MP, 401879HJ, 401402EN, 401413RG, 401908YM, 401832MC, 400201PK, 401400NP
Known GenesSLC15A4
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv527e212
Frequency
Sample Size873
Observed Gain0
Observed Loss183
Observed Complex0
Frequencyn/a


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