A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv524e212



Internal ID20148980
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:123614065..123625575hg38UCSC Ensembl
chr12:124098612..124110122hg19UCSC Ensembl
Cytoband12q24.31
Allele length
AssemblyAllele length
hg3811511
hg1911511
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3580513, esv3580512
Samples401221LD, 401640WJ, 401518VK, 401468RL, 400059SV, 400643LD, 401402EN, 400558BL, 401308LD, 400893ZE, 401780BB, 401303FM, 400729HC, 401013GJ, 400352CA, 401085LA, 401714BM, 401210PB, 401519SA, 401444LD, 400603CJ, 401535RJ, 400837HN, 400454RE, 400053LE, 401016IT, 401844ZD, 401847RK, 401250WD, 401735LE, 400833BB, 400261RN, 400581VJ, 401453OL, 400209BS, 400540BM, 401993HM, 400255CD, 401497PR
Known GenesDDX55, EIF2B1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv524e212
Frequency
Sample Size873
Observed Gain0
Observed Loss39
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer