A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv522e212



Internal ID20148978
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:121387834..121410687hg38UCSC Ensembl
chr12:121825637..121848490hg19UCSC Ensembl
Cytoband12q24.31
Allele length
AssemblyAllele length
hg3822854
hg1922854
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3580509, esv3580507
Samples400503HD, 400368SD, 400103BN, 401149VA, 401143LK, 400152MR
Known GenesRNF34
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv522e212
Frequency
Sample Size873
Observed Gain0
Observed Loss6
Observed Complex0
Frequencyn/a


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