A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv51n68



Internal ID20147820
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr19:35841011..36016692hg38UCSC Ensembl
chr19:36331913..36507594hg19UCSC Ensembl
chr19:41023753..41199434hg18UCSC Ensembl
chr19:41023753..41199434hg17UCSC Ensembl
Cytoband19q13.12
Allele length
AssemblyAllele length
hg38175682
hg19175682
hg18175682
hg17175682
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnsv833813, nsv833812
Samples
Known GenesALKBH6, APLP1, CLIP3, HCST, KIRREL2, LRFN3, NFKBID, NPHS1, SDHAF1, SYNE4, TYROBP
MethodBAC aCGH
AnalysisExperimental SDs (SDautosome) were calculated for each experiment on the basis of the log2 ratios of the 24,392 reliable clones minus the clones removed because of low signal-to-noise ratio (SNR) or high SD of replicate clone measures (SDclone). Thresholds for determining CNV clones were set at a multiple of the SDautosome value. For each experiment, clones were annotated as uninformative if they were filtered via SNR or SDclone, as a CNV loss if the log2 ratio was less than the negative threshold, as unchanged if the log2 ratio was between the negative and positive thresholds, and as a CNV gain if the log2 ratio was above the positive threshold.
PlatformGPL2616
Comments
ReferenceWong_et_al_2007
Pubmed ID17160897
Accession Number(s)dgv51n68
Frequency
Sample Size95
Observed Gain0
Observed Loss5
Observed Complex0
Frequencyn/a


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