A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv495e212



Internal ID22783422
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:80995561..81006069hg38UCSC Ensembl
chr12:81389340..81399848hg19UCSC Ensembl
Cytoband12q21.31
Allele length
AssemblyAllele length
hg3810509
hg1910509
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3580348, esv3580350
Samples400359OR, 401366WD, 400554WB, 400132HN, 401117NA, 401845MJ, 400658BW, 400441GS, 400379BB, 401551MB, 400893ZE, 401842BJ, 402064DC, 401239PR, 400650RM, 402061PI, 401609MB, 401791FG, 400107MJ, 401192MJ, 400763BT, 400302HW, 400416KA, 400838AM, 401454CD, 400361HC, 401311GL, 400249BC, 400211BJ, 400362TV, 401259LS, 400611GG, 401365DJ, 401010HT, 400267GD, 402048WB, 401571SD, 400586RD, 401763SG, 400021ME, 402024BB, 400243CK
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv495e212
Frequency
Sample Size873
Observed Gain0
Observed Loss42
Observed Complex0
Frequencyn/a


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