A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv485e212



Internal ID22783412
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:47555220..47656841hg38UCSC Ensembl
chr12:47949003..48050624hg19UCSC Ensembl
Cytoband12q13.11
Allele length
AssemblyAllele length
hg38101622
hg19101622
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3581549, esv3581560
Samples401832MC, 401348RB
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv485e212
Frequency
Sample Size873
Observed Gain2
Observed Loss0
Observed Complex0
Frequencyn/a


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