A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv439e212



Internal ID19007647
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:2136683..2150788hg38UCSC Ensembl
chr12:2245849..2259954hg19UCSC Ensembl
Cytoband12p13.33
Allele length
AssemblyAllele length
hg3814106
hg1914106
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3580064, esv3580044, esv3580051, esv3580047, esv3580055, esv3580058, esv3580059, esv3580060, esv3580063, esv3580046, esv3580062, esv3580049, esv3580053, esv3580052
Samples401739BJ, 401892MJ, 401067BD, 401543DC, 401026AM, 401262RR, 401285HN, 400983PV, 400234CA, 401783BD, 400579HJ, 402019MC, 400069CN, 401652HL, 400863SS, 400353ML, 400198MD, 401993HM, 400249BC, 402028BD, 400060MC, 400594VJ, 400655WB, 400729HC, 401390DG, 400838AM, 400444MM, 400177SJ, 400285FA, 401238QR, 401845MJ, 400675HC, 401234MB, 40050SB, 400588BE, 401813DN, 401111LH
Known GenesCACNA1C
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv439e212
Frequency
Sample Size873
Observed Gain0
Observed Loss37
Observed Complex0
Frequencyn/a


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