A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv417e212



Internal ID22783344
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr11:118268283..118283863hg38UCSC Ensembl
chr11:118138998..118154578hg19UCSC Ensembl
Cytoband11q23.3
Allele length
AssemblyAllele length
hg3815581
hg1915581
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3579926, esv3579924, esv3579928, esv3579925
Samples400920MK, 400359OR, 400927BD, 400599CP, 400439IM, 400739SS, 400619MP, 401385BB, 400313DF, 401503MJ, 401299ST, 400272AE, 400221VM, 401183HP, 401927SK, 401195PN, 400553PP, 401820SD, 401556KR, 400948EV, 401536BD, 401030GI, 401582GG, 400953MR, 402016HZ, 401064FR, 401926MR, 401297KC, 401006ES, 401239PR, 400882DD, 401908YM, 400583HS, 400320RN, 400033KC, 400307HW, 400356MC, 401766MR, 400427SD, 401550SP, 400353ML, 401495NR, 401198TI, 401818PC, 401013GJ, 400413FJ, 401050GS, 401505WI, 401939GD, 401913GT, 400977SC, 401717LP, 401357MH, 400960TN, 401862AN, 401423BA, 401813DN, 401506LK, 401619BT, 402022SM, 401892MJ, 400888MS, 400387HE, 400047DS, 401919MD, 402074RR, 401580CA, 401795SP, 401874DJ, 401259LS, 401700BN, 400788PV, 400430KV, 400177CG, 401616WP, 400818BL, 400201PK, 401535RJ, 401496SL, 400156WT, 401847RK, 401786WD, 401661HD, 400971MK, 401143LK, 401797LS, 400130HA, 400084DM, 400508RD, 400266BA, 400581VJ, 401480PG, 401207DA
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv417e212
Frequency
Sample Size873
Observed Gain0
Observed Loss93
Observed Complex0
Frequencyn/a


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