Variant DetailsVariant: dgv401e212 | Internal ID | 22783328 | | Landmark | | | Location Information | | | Cytoband | 11q14.2 | | Allele length | | Assembly | Allele length | | hg38 | 2966 | | hg19 | 2966 |
| | Variant Type | CNV loss | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | | | Supporting Variants | esv3579797, esv3579798, esv3579796, esv3579795 | | Samples | 401706BJ, 401640WJ, 400132HN, 400101EH, 400468OB, 401460LW, 401249TP, 401582GG, 401551MB, 400893ZE, 400827MM, 400343BD, 401780BB, 402065BG, 400073HT, 401401BA, 400348DK, 401155ML, 401133JG, 400107MJ, 401050GS, 400663MD, 401939GD, 401623SN, 401357MH, 401119DK, 401879HJ, 400248JO, 401711WS, 400422PN, 401112LG, 400451kh, 401365DJ, 401413RG, 401567BD, 400271SR, 401681MS, 401458RT, 400164SS | | Known Genes | GRM5 | | Method | SNP array | | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | | Platform | Affymetrix CytoScan HD 2.7M array | | Comments | | | Reference | Uddin_et_al_2014 | | Pubmed ID | 25503493 | | Accession Number(s) | dgv401e212
| | Frequency | | Sample Size | 873 | | Observed Gain | 0 | | Observed Loss | 39 | | Observed Complex | 0 | | Frequency | n/a |
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