A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv39e212



Internal ID20148495
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:54647335..54655840hg38UCSC Ensembl
chr1:55113008..55121513hg19UCSC Ensembl
Cytoband1p32.3
Allele length
AssemblyAllele length
hg388506
hg198506
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3577873, esv3577871
Samples400478WE, 401736BF
Known GenesMROH7, MROH7-TTC4
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv39e212
Frequency
Sample Size873
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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