Variant DetailsVariant: dgv37e212 Internal ID | 20148493 | Landmark | | Location Information | | Cytoband | 1p32.3 | Allele length | Assembly | Allele length | hg38 | 3364 | hg19 | 3364 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | esv3577866, esv3577867, esv3577870 | Samples | 400063BR, 401249TP, 400627CC, 401860TJ, 401842BJ, 400368SD, 401155ML, 401550SP, 400113LD, 401913GT, 400381CA, 400361HC, 400319HT, 401696CG, 400795CL, 401595BL, 400158FB, 401571SD, 400835FD, 400013TA | Known Genes | ACOT11 | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | dgv37e212
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 20 | Observed Complex | 0 | Frequency | n/a |
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