Variant DetailsVariant: dgv369e212 | Internal ID | 20148825 | | Landmark | | | Location Information | | | Cytoband | 11q11 | | Allele length | | Assembly | Allele length | | hg38 | 90237 | | hg19 | 90237 |
| | Variant Type | CNV gain | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | | | Supporting Variants | esv3579261, esv3579449, esv3578917, esv3579161, esv3579361, esv3579494, esv3579039, esv3579349, esv3579316, esv3578871, esv3579139, esv3578983, esv3579405, esv3579327, esv3579438, esv3579505, esv3578893, esv3578950, esv3579305, esv3579028, esv3579427, esv3579272, esv3579016, esv3579250, esv3579372, esv3578904, esv3579483, esv3579150 | | Samples | 400520FM, 400191MP, 400427SD, 401052BM, 401595BL, 401221LD, 400534ME, 400949AM, 401495NR, 401979TB, 400778SR, 401543DC, 400030WD, 400545EW, 401165SB, 401438HT, 401912HD, 400789KV, 400558BL, 400168HC, 401175FA, 400132HN, 401489CB, 400294HD, 401841OB, 401972BA, 400381CA, 400454RE, 400255CD, 401566DD, 400246MG, 401074CM, 401517PR, 400540BM, 400047DS, 400821FE, 400379BB, 401176BD, 401602PR, 401354KM, 400277LM, 401943KA, 401075MN, 400458LS, 400213DB, 400653GP, 400494ML, 400603CJ, 400663MD, 401809FU, 401552BK, 400730SH, 401210PB, 400631SJ, 401771OS, 400930MK, 400482MD, 401487FW, 401442WR, 401630MK, 400615RI, 401609MB, 400038CK, 400136DM, 401931JL, 401975VD, 401177SL, 400863SS, 401864CV, 400564SN, 400523GB, 400383HL, 401448BJ, 401734PG, 401096SL, 401203MP, 401822TL, 400307HW, 401603HH, 400059SV, 401152MV, 401348RB, 400410CD, 400574MA, 401117NA, 402074RR, 400063BR, 401881TJ, 401873BK, 400282RA, 400619MP, 400737GC, 401935TM, 400411TG, 401249TP, 400033KC, 400329HJ, 401278DM, 400103BN, 400021ME, 400385LJ, 401592NR, 401918CA, 400218WK, 401719RL, 400785AK, 400341GL, 401251WN, 401618HR, 400795CL, 401730MS, 400618GC, 402048WB, 401994BD, 401365DJ, 401700BN, 401191MI, 400721DJ, 401672FD, 400542EG, 401277RA, 400571WV, 400866RR, 400006DK, 401377MA, 401899MB, 400650RM, 400906BR, 400601WC, 400444MM, 400620MT, 400512LR, 401498HH, 401634CH, 401020DJ, 401859GS, 401589HP, 400977SC, 401287CF, 400836LK, 400124FR, 400639RP, 401698SB, 401746WW, 401845MJ, 400974PS, 400101EH, 401151RJ, 400817MB, 400425SL, 400338SR, 400292LP, 400079AP, 401791FG, 400050RL, 401261HD, 400235MP, 400122PL, 400588BE, 400209BS, 400525MR, 400158FB, 401906DT, 400509CJ, 400695PH, 400245SJ, 400340CD, 400844GP | | Known Genes | OR4C11, OR4C6, OR4P4, OR4S2 | | Method | SNP array | | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | | Platform | Affymetrix CytoScan HD 2.7M array | | Comments | | | Reference | Uddin_et_al_2014 | | Pubmed ID | 25503493 | | Accession Number(s) | dgv369e212
| | Frequency | | Sample Size | 873 | | Observed Gain | 168 | | Observed Loss | 0 | | Observed Complex | 0 | | Frequency | n/a |
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