Variant DetailsVariant: dgv368e212 | Internal ID | 20148824 | | Landmark | | | Location Information | | | Cytoband | 11q11 | | Allele length | | Assembly | Allele length | | hg38 | 89670 | | hg19 | 89670 |
| | Variant Type | CNV loss | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | | | Supporting Variants | esv3579612, esv3579666, esv3579668, esv3579629, esv3579672, esv3579665, esv3579667, esv3579662, esv3579675, esv3579648, esv3579659, esv3579677, esv3579639, esv3579661, esv3579663, esv3579617, esv3579644, esv3579633, esv3579615, esv3579669, esv3579679, esv3579658, esv3579623, esv3579647, esv3579654 | | Samples | 400982BS, 401474CE, 401021SC, 400287BP, 400424LN, 401292ER, 401196CR, 401852SK, 400739SS, 400802DP, 401146US, 400455SJ, 400432VA, 401956DQ, 400626FC, 400622SJ, 401742KB, 401321CE, 401966SR, 401183HP, 401384BP, 400553PP, 400325BE, 401824MM, 400641WJ, 401857VG, 401536BD, 400453LN, 401030GI, 401308LD, 401132CH, 400360SM, 400298ME, 400669LD, 400606HW, 401926MR, 401792KR, 401842BJ, 400503HD, 400773GS, 400061DE, 400022WA, 400320RN, 400871CM, 401133JG, 400002HK, 400733SW, 401013GJ, 400843FL, 401764JJ, 401977ES, 400007RG, 400825TW, 400515ZG, 401900RJ, 401939GD, 400838AM, 400207HN, 401594MP, 401526WB, 400093BL, 401519SA, 401968HL, 400994HJ, 400076LC, 401419SW, 401346FJ, 400171BJ, 402054BD, 402001SR, 400888MS, 401087SF, 400854SG, 401067BD, 400242TP, 400422PN, 401696CG, 400135DR, 401514BA, 400518MS, 400201PK, 401391PJ, 400671PP, 400732MA, 400722OM, 400053LE, 402009WP, 400845ML, 401611CD, 401661HD, 401149VA, 400859SC, 400328LM, 4000046CJ, 401166WJ, 401143LK, 401056TJ, 401100SJ, 401817MC, 401781SL, 401728WK, 400130HA, 401607LL, 400108BJ, 400084DM, 402042BJ, 401836SI, 401882CR, 400300SD, 400164SS, 401612HB, 400942HR | | Known Genes | OR4C11, OR4C6, OR4P4, OR4S2 | | Method | SNP array | | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | | Platform | Affymetrix CytoScan HD 2.7M array | | Comments | | | Reference | Uddin_et_al_2014 | | Pubmed ID | 25503493 | | Accession Number(s) | dgv368e212
| | Frequency | | Sample Size | 873 | | Observed Gain | 0 | | Observed Loss | 112 | | Observed Complex | 0 | | Frequency | n/a |
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