A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv361n27



Internal ID22767090
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr17:15140682..15157290hg38UCSC Ensembl
chr17:15043999..15060607hg19UCSC Ensembl
chr17:14984724..15001332hg18UCSC Ensembl
chr17:14984724..15001332hg17UCSC Ensembl
Cytoband17p12
Allele length
AssemblyAllele length
hg3816609
hg1916609
hg1816609
hg1716609
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnsv457688, nsv457687, nsv457690, nsv457694, nsv457693, nsv457691, nsv457692, nsv457686, nsv457684, nsv457689
SamplesHGDP01209, HGDP01231, HGDP00758, HGDP01312, HGDP00977, HGDP01240, HGDP00583, HGDP01341, HGDP00832, HGDP00161
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)dgv361n27
Frequency
Sample Size1557
Observed Gain0
Observed Loss10
Observed Complex0
Frequencyn/a


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