A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv324e212



Internal ID19007532
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr11:14136891..14149673hg38UCSC Ensembl
chr11:14158437..14171219hg19UCSC Ensembl
Cytoband11p15.2
Allele length
AssemblyAllele length
hg3812783
hg1912783
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3579377, esv3579376
Samples400526DR, 400333CC
Known GenesSPON1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv324e212
Frequency
Sample Size873
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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