A curated catalogue of human genomic structural variation

Variant Details

Variant: dgv313n27

Internal ID20132571
Location Information
TypeCoordinatesAssemblyOther Links
chr15:34426393..34579095hg38UCSC Ensembl
chr15:34718594..34871296hg19UCSC Ensembl
chr15:32505886..32658588hg18UCSC Ensembl
chr15:32505886..32658588hg17UCSC Ensembl
Allele length
AssemblyAllele length
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnsv456939, nsv456973, nsv456936, nsv457009, nsv456958, nsv456989, nsv456968, nsv457038, nsv457022, nsv457047, nsv457033, nsv457032, nsv457046, nsv457036, nsv457028, nsv457016, nsv457054, nsv456931, nsv457048, nsv456988, nsv456964, nsv457065, nsv457062, nsv457044, nsv457027, nsv456998, nsv456984, nsv456981, nsv456975, nsv456937, nsv457051, nsv456980, nsv456995, nsv457061, nsv457031, nsv457012, nsv456970, nsv456929, nsv457045, nsv456956, nsv456967, nsv456953, nsv456944, nsv457064, nsv456982, nsv457021, nsv456983, nsv456926, nsv456951, nsv456955, nsv456991, nsv456954, nsv456994, nsv456961, nsv457058, nsv457006, nsv456947, nsv457050, nsv457059, nsv457055, nsv456960, nsv457000, nsv456950, nsv456948, nsv456940, nsv457003, nsv457017, nsv457013, nsv457056, nsv456928, nsv457057, nsv456966, nsv457023, nsv457040, nsv456979, nsv456933, nsv456927, nsv456987, nsv456977, nsv457007, nsv457060, nsv456986, nsv456993, nsv456934, nsv457020, nsv456957, nsv457035, nsv456942, nsv457024, nsv456962, nsv456945, nsv457029, nsv457069, nsv456949, nsv456976, nsv457004, nsv457067, nsv457034, nsv457015, nsv456972, nsv457070, nsv456943, nsv456978, nsv456938, nsv457001, nsv457002, nsv457042, nsv457005, nsv457039, nsv456971, nsv456935, nsv457043, nsv456959, nsv457014, nsv456932, nsv456990, nsv457053
SamplesHGDP01254, HGDP00682, 1780846030_A, HGDP00417, 1788485589_A, HGDP00552, HGDP00183, NINDS_247, HGDP01350, NINDS_243, 1780862227_A, 1780862578_A, HGDP01153, HGDP00601, HGDP00438, HGDP00148, HGDP00794, 1780862304_A, HGDP01221, HGDP01348, 1780854334_A, HGDP01300, HGDP01245, 1780862355_A, 1780862584_A, HGDP00455, HGDP01376, HGDP00701, HGDP00686, HGDP00814, HGDP01081, NINDS_80, HGDP01290, HGDP00778, HGDP00035, HGDP00298, HGDP01408, NINDS_114, 1780854537_A, 1780862448_A, 1780862085_A, HGDP01318, HGDP00191, NINDS_116, 1780862126_A, HGDP00412, HGDP01029, 1780862585_A, 1798860491_A, NINDS_217, 1798860565_A, NINDS_110, 1780854264_A, HGDP00210, HGDP01009, HGDP00146, 1780862378_A, HGDP00181, 1780862460_A, 1782681275_A, HGDP00870, HGDP01184, HGDP00100, HGDP00226, HGDP00131, HGDP01027, NINDS_85, 1780854318_A, 1782681111_A, 1780862424_A, HGDP00547, HGDP00975, HGDP01059, NINDS_181, HGDP00135, 1780862577_A, HGDP00491, HGDP01237, NINDS_199, 1780862437_A, HGDP00630, 1780862547_A, 1782681142_A, HGDP00669, 1780862415_A, 1780854463_A, HGDP01283, 1780854023_A, 1780862470_A, HGDP00070, 1782681080_A, HGDP01275, HGDP00556, 1780862197_A, 1782681378_A, 1780854327_A, HGDP00540, HGDP00877, HGDP00772, HGDP01338, HGDP00554, NINDS_29, HGDP01377, NINDS_60, NINDS_245, 1780862084_A, 1782681495_A, 1780862539_A, HGDP01202, HGDP00189, HGDP00544, HGDP00670, NINDS_226, 1780854238_A, HGDP00613, HGDP00579, HGDP01403
Known GenesGOLGA8A, GOLGA8B, MIR1233-1, MIR1233-2
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Pubmed ID19166990
Accession Number(s)dgv313n27
Sample Size1557
Observed Gain0
Observed Loss117
Observed Complex0

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