Variant DetailsVariant: dgv312e212 | Internal ID | 22783239 | | Landmark | | | Location Information | | | Cytoband | 11p15.4 | | Allele length | | Assembly | Allele length | | hg38 | 26122 | | hg19 | 26122 |
| | Variant Type | CNV loss | | Copy Number | | | Allele State | | | Allele Origin | | | Probe Count | | | Validation Flag | | | Merged Status | M | | Merged Variants | | | Supporting Variants | esv3579303, esv3579312, esv3579311, esv3579310, esv3579318, esv3579281, esv3579297, esv3579278, esv3579293, esv3579302, esv3579286, esv3579287, esv3579309, esv3579288, esv3579313, esv3579292, esv3579307, esv3579280, esv3579285, esv3579282, esv3579308, esv3579279, esv3579306, esv3579273, esv3579295, esv3579315 | | Samples | 401474CE, 400247CL, 400075MR, 401110GJ, 400570RW, 400424LN, 401292ER, 401196CR, 400739SS, 400268SY, 400789KV, 401052BM, 400572PJ, 400377WJ, 400101EH, 401962BK, 400140WM, 400970VE, 400429YF, 401518VK, 401299ST, 400995MS, 400852WJ, 401384BP, 400899NK, 401426WD, 400453LN, 400558BL, 400347VJ, 400379BB, 400438DB, 400669LD, 401297KC, 400051MR, 401695BT, 402064DC, 401006ES, 401239PR, 400337HG, 400503HD, 400134WK, 400033KC, 401832MC, 400307HW, 401664SD, 401104DM, 401495NR, 400478WE, 400653GP, 401609MB, 400729HC, 400507VD, 400186WC, 400733SW, 400413FJ, 401873BK, 400411TG, 401725MR, 400302HW, 400825TW, 400416KA, 402033WD, 400702PA, 401863BD, 401623SN, 402052ZA, 401432SB, 400768MN, 401230NL, 401357MH, 400496BL, 401526WB, 400082SD, 401586RS, 401630MK, 401943KA, 400124FR, 4000657TM, 401619BT, 401478RD, 400705KK, 401444LD, 400547BS, 401075MN, 401087SF, 400886MP, 400047DS, 401875FG, 401086MD, 400319HT, 400571WV, 400520FM, 400450FG, 400611GG, 401700BN, 401514BA, 401182OC, 400177CG, 401677MM, 400444MM, 401334DH, 400201PK, 401361GG, 400837HN, 400454RE, 401203MP, 400158FB, 401016IT, 402009WP, 400156WT, 401025SM, 401552BK, 401287CF, 401894PD, 400501SJ, 401571SD, 400971MK, 401858TP, 401372RR, 401763SG, 400849SH, 401681MS, 401358VP, 401912HD, 401781SL, 400315DA, 400835FD, 400291VJ, 400150SS, 400012CJ, 401510DG, 400540BM, 401180GR, 401497PR, 401021SC, 400984LD, 401852SK, 401489CB, 401400NP, 400455SJ, 400917CG, 400737GC, 400094RS, 400876OG, 400313DF, 401235IA, 400468OB, 400294HD, 400230TB, 401742KB, 401330RR, 401117NA, 401079HJ, 400141CC, 400655WB, 400595CP, 401931JL, 400834SS, 400625FT, 401093VL, 400199SA, 401468RL, 401674DD, 400797ST, 401536BD, 400425SL, 401030GI, 400441GS, 400241CP, 401019MP, 400155CW, 400893ZE, 401906DT, 401975VD, 400827MM, 401281BP, 401926MR, 402028BD, 400631SJ, 401869BG, 400022WA, 401252AE, 400292LP, 401155ML, 401831TW, 401198TI, 401532LJ, 401773AM, 401801LA, 401393JW, 401406KF, 400109LJ, 401620BA, 401192MJ, 400041LJ, 400763BT, 401726LW, 401397WN, 401900RJ, 401714BM, 400236DB, 400870KC, 401499JR, 401274PA, 400070PC, 401736BF, 401617KM, 400285FA, 401694SG, 400375KA, 400758KP, 401879HJ, 400265LK, 401771OS, 400724CD, 401346FJ, 401952UH, 400888MS, 401443JK, 401493HC, 401067BD, 400278PD, 401919MD, 402074RR, 401200BD, 401874DJ, 400135DR, 400274TL, 400483DP, 400845ML, 400246MG, 400295PS, 400069CN, 401288LD, 400128MJ, 402048WB, 401166WJ, 401809FU, 400719TM, 402073LQ, 401250WD, 400108BJ, 401040KM, 400581VJ, 401453OL, 401882CR, 400091BS, 400704LC, 400982BS, 401207DA | | Known Genes | OR52N1, OR52N5 | | Method | SNP array | | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | | Platform | Affymetrix CytoScan HD 2.7M array | | Comments | | | Reference | Uddin_et_al_2014 | | Pubmed ID | 25503493 | | Accession Number(s) | dgv312e212
| | Frequency | | Sample Size | 873 | | Observed Gain | 0 | | Observed Loss | 250 | | Observed Complex | 0 | | Frequency | n/a |
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