A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv29e212



Internal ID22782956
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:42543567..42551673hg38UCSC Ensembl
chr1:43009238..43017344hg19UCSC Ensembl
Cytoband1p34.2
Allele length
AssemblyAllele length
hg388107
hg198107
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3577826, esv3577825
Samples400737GC, 401390DG, 400688FL, 401432SB, 400265LK, 400361HC, 401728WK, 401395OP
Known GenesCCDC30
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv29e212
Frequency
Sample Size873
Observed Gain0
Observed Loss8
Observed Complex0
Frequencyn/a


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