A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv296e212



Internal ID22783223
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr10:122584422..122594990hg38UCSC Ensembl
chr10:124343938..124354506hg19UCSC Ensembl
Cytoband10q26.13
Allele length
AssemblyAllele length
hg3810569
hg1910569
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3579193, esv3579197, esv3579195, esv3579196, esv3579206, esv3579204, esv3579207, esv3579202, esv3579174
Samples401936BA, 400627CC, 400688FL, 400427SD, 400870KC, 401348RB, 401287CF, 401763SG, 400785AK, 400013TA
Known GenesDMBT1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv296e212
Frequency
Sample Size873
Observed Gain0
Observed Loss10
Observed Complex0
Frequencyn/a


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