Variant DetailsVariant: dgv285e212 Internal ID | 20148741 | Landmark | | Location Information | | Cytoband | 10q25.2 | Allele length | Assembly | Allele length | hg38 | 23530 | hg19 | 23530 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | esv3579125, esv3579126, esv3579128 | Samples | 401489CB, 400432VA, 400737GC, 400294HD, 401403TD, 401918CA, 400834SS, 401721CP, 400453LN, 400347VJ, 400155CW, 401634CH, 401808PS, 400482MD, 400348DK, 400374LB, 401393JW, 400502GS, 401977ES, 401979TB, 401085LA, 401333MM, 401859GS, 400705KK, 400943DV, 401334DH, 401057SS, 400235MP, 400072GR, 401861GG, 400996MC, 400661AD, 401490TL, 400269DA, 401362ME | Known Genes | VTI1A | Method | SNP array | Analysis | We used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection. | Platform | Affymetrix CytoScan HD 2.7M array | Comments | | Reference | Uddin_et_al_2014 | Pubmed ID | 25503493 | Accession Number(s) | dgv285e212
| Frequency | Sample Size | 873 | Observed Gain | 0 | Observed Loss | 35 | Observed Complex | 0 | Frequency | n/a |
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