A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv2839n166



Internal ID20168267
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:1251599..1387144hg38UCSC Ensembl
chrX:1370492..1506037hg19UCSC Ensembl
CytobandXp22.33
Allele length
AssemblyAllele length
hg38135546
hg19135546
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnsv4042907, nsv4037852, nsv4038358
Samples
Known GenesCSF2RA, IL3RA, MIR3690, MIR3690-2, SLC25A6
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)dgv2839n166
Frequency
Sample Size10847
Observed Gain3
Observed Loss0
Observed Complex0
Frequencyn/a


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