A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv2566e212



Internal ID20151022
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrY:23697393..24020207hg38UCSC Ensembl
chrY:25843540..26166354hg19UCSC Ensembl
CytobandYq11.223
Allele length
AssemblyAllele length
hg38322815
hg19322815
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3577634, esv3577632, esv3577633, esv3577630, esv3577635
Samples400298ME, 400109LJ, 400733SW, 401027KW, 401477ST
Known GenesTTTY3, TTTY3B
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv2566e212
Frequency
Sample Size873
Observed Gain5
Observed Loss0
Observed Complex0
Frequencyn/a


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