A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv2532e212



Internal ID22785459
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:152255361..152262835hg38UCSC Ensembl
chrX:151423833..151431307hg19UCSC Ensembl
CytobandXq28
Allele length
AssemblyAllele length
hg387475
hg197475
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3574998, esv3574999
Samples400105BB, 401200BD, 401829FJ, 401040KM, 401284NA, 401068SD
Known GenesGABRA3
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv2532e212
Frequency
Sample Size873
Observed Gain0
Observed Loss6
Observed Complex0
Frequencyn/a


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