A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv2528e212



Internal ID22785455
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:150876002..150877898hg38UCSC Ensembl
chrX:150044475..150046371hg19UCSC Ensembl
CytobandXq28
Allele length
AssemblyAllele length
hg381897
hg191897
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3574983, esv3574982
Samples400114GR, 401691HA, 401067BD, 401334DH, 400508RD
Known GenesCD99L2
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv2528e212
Frequency
Sample Size873
Observed Gain0
Observed Loss5
Observed Complex0
Frequencyn/a


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