A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv2506e212



Internal ID20150962
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:147917024..147918889hg38UCSC Ensembl
chrX:146998542..147000407hg19UCSC Ensembl
CytobandXq27.3
Allele length
AssemblyAllele length
hg381866
hg191866
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3574906, esv3574911, esv3574905, esv3574908, esv3574907, esv3574910
Samples401102RD, 400801HS, 401021SC, 400316SL, 401806DL, 400308SP, 401420PJ, 400926LJ, 401734PG, 400594VJ, 400512LR, 400626FC, 400970VE, 400995MS, 400595CP, 401093VL, 401556KR, 400643LD, 400453LN, 401500OM, 401906DT, 401926MR, 401792KR, 400743LS, 401687LR, 400337HG, 400073HT, 401165SB, 400307HW, 400385LJ, 400333CC, 400579HJ, 401997HB, 401393JW, 400186WC, 401192MJ, 400352CA, 400302HW, 400007RG, 400825TW, 400416KA, 401655DC, 401125LM, 401717LP, 401853WR, 400994HJ, 401864CV, 401771OS, 401762SD, 400124FR, 401346FJ, 400686BM, 401812HG, 401414CR, 400854SG, 400211BJ, 400603CJ, 401875FG, 400248JO, 400999HR, 401874DJ, 401696CG, 400695PH, 400518MS, 400788PV, 400444MM, 400624RJ, 401595BL, 401496SL, 401608GE, 401958MF, 400863SS, 400769SL, 401240ML, 401215MJ, 400719TM, 400792RE, 401817MC, 401912HD, 401458RT, 401932GN, 400300SD, 400540BM, 402024BB, 400942HR
Known GenesFMR1, FMR1-AS1
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv2506e212
Frequency
Sample Size873
Observed Gain0
Observed Loss85
Observed Complex0
Frequencyn/a


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