A curated catalogue of human genomic structural variation




Variant Details

Variant: dgv2480e212



Internal ID22785407
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:137410177..137413589hg38UCSC Ensembl
chrX:136492336..136495748hg19UCSC Ensembl
CytobandXq26.3
Allele length
AssemblyAllele length
hg383413
hg193413
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv3577417, esv3577414, esv3577415, esv3577412
Samples401251WN, 400375KA, 401630MK, 401112LG, 400458LS, 400300SD
Known Genes
MethodSNP array
AnalysisWe used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek. Our primary analysis was performed based on ChAS CNV calls, which were then supported using the remaining three algorithms to construct a confidence set of CNVs. For all algorithms, we have used 8 probes and >1kb as a base line cutoff for CNV detection.
PlatformAffymetrix CytoScan HD 2.7M array
Comments
ReferenceUddin_et_al_2014
Pubmed ID25503493
Accession Number(s)dgv2480e212
Frequency
Sample Size873
Observed Gain6
Observed Loss0
Observed Complex0
Frequencyn/a


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